Neandertal mtDNA (Query) compared with Human mtDNA (Sbjct):

 

24 differences including an INSERTION altering the reading frame (comparing a

fragment of 378 nucleotides)

AF011222

Krings,M., Stone,A., Schmitz,R.W., Krainitzki,H., Stoneking,M. and Paabo,S., 

Neandertal DNA sequences and the origin of modern humans, 

Cell 90 (1), 19-30 (1997)

Homo sapiens neanderthalensis mitochondrial D-loop hypervariable region 1

>gi|13272864|gb|AF346985.1|AF346985 Homo sapiens mitochondrion, complete genome.

Length = 16567

 Score = 509 bits (257), Expect = e-142

 Identities = 346/378 (91%), Gaps = 1/378 (0%)

 Strand = Plus / Plus

Query: 1 gttctttcatgggggagcagatttgggtaccacccaagtattgactcacccatcagcaac 60

 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||

Sbjct: 16021 gttctttcatggggaagcagatttgggtaccacccaagtattgactcacccatcaacaac 16080

Query: 61 cgctatgtatctcgtacattactgttagttaccatgaatattgtacagtaccataattac 120

 |||||||||| ||||||||||||| || |||||||||||||||||||||||||| |||

Sbjct: 16081 cgctatgtatttcgtacattactgccagccaccatgaatattgtacagtaccataaatac 16140

Query: 121 ttgactacctgcagtacataaaaacctaatccacatcaaacccccccccccatgcttaca 180

 ||||||||||| ||||||||||||| || |||||||||| ||| ||||||||||||||

Sbjct: 16141 ttgactacctgtagtacataaaaactcaacccacatcaaaaccctgcccccatgcttaca 16200

Query: 181 agcaagcacagcaatcaaccttcaactgtcatacatcaactacaactccaaagacgccct 240

 |||||| |||||||||||||||||||||||| ||||||||| ||||||||||| | ||| 

Sbjct: 16201 agcaagtacagcaatcaaccttcaactgtcacacatcaactgcaactccaaagccacccc 16260

Query: 241 tacacccactaggatatcaacaaacctacccacccttgacagtacatagcacataaagtc 300

 | |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||

Sbjct: 16261 t-cacccactaggataccaacaaacctacccacccttaacagtacatagcacataaagtc 16319

Query: 301 atttaccgtacatagcacattacagtcaaatcccttctcgcccccatggatgacccccct 360

 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||

Sbjct: 16320 atttaccgtacatagcacattacagtcaaatcccttctcgcccccatggatgacccccct 16379

Query: 361 cagataggggtcccttga 378

 ||||||||||||||||||

Sbjct: 16380 cagataggggtcccttga 16397

 

 

11 differences including 3 INSERTIONS (comparing a fragment of 345 nucleotides)

AF142095

Krings,M., Geisert,H., Schmitz,R.W., Krainitzki,H. and Paabo,S., 

DNA sequence of the mitochondrial hypervariable region II from the neandertal type specimen, 

Proc. Natl. Acad. Sci. U.S.A. 96 (10), 5581-5585 (1999).

Homo sapiens neanderthalensis mitochondrial control region, hypervariable region II.

>gi|10046763|emb|AJ297064.1|HSA297064 

Homo sapiens mitochondrial SDS-stable vimentin-bound DNA fragment 

HEF42VIM24. Length = 743

 Score = 593 bits (299), Expect = e-167

 Identities = 334/345 (96%), Gaps = 3/345 (0%)

 Strand = Plus / Plus

Query: 1 ttttcgtctggggggtgtgcacgcgatagcattgcgagacgctggagccggagcacccta 60

 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||

Sbjct: 57 ttttcgtctggggggtgtgcacgcgatagcattgcgagacgctggagccggagcacccta 116

Query: 61 tgtcgcagtatctgtctttgattcctgccccattccattatttatcgcacctacgttcaa 120

 ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||

Sbjct: 117 tgtcgcagtatctgtctttgattcctgcctcatcccattatttatcgcacctacgttcaa 176

Query: 121 tattacaggcgagcatacttactaaagtgtgttaattaattaatgcttgtaggacataat 180

  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||

Sbjct: 177 tattacaggcgaacatacttactaaagtgtgttaattaattaatgcttgtaggacataat 236

Query: 181 aataacgactaaatgtctgcacagctgctttccacacagacatcataacaaaaaatttcc 240

 |||||| | | |||||||||||||| ||||||||||||||||||||||||||||||||||

Sbjct: 237 aataacaattgaatgtctgcacagccgctttccacacagacatcataacaaaaaatttcc 296

Query: 241 accaaaccccctttcctcccccgcttctggccacagcacttaaacacatctctgccaaac 300

 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||

Sbjct: 297 accaaaccccc---cctcccccgcttctggccacagcacttaaacacatctctgccaaac 353

Query: 301 cccaaaaacaaagaaccctaacaccagcctaaccagacttcaaat 345

 ||||||||||||||||||||||||||||||||||||| |||||||

Sbjct: 354 cccaaaaacaaagaaccctaacaccagcctaaccagatttcaaat 398

 

 

19 differences including one INSERTION altering the reading frame (comparing a fragment of 345 nucleotides)

AF254446 

Ovchinnikov,I.V., Gotherstrom,A., Romanova,G.P., Kharitonov,V.M., Liden,K. and Goodwin,W., 

Molecular analysis of Neanderthal DNA from the northern Caucasus, 

Nature 404 (6777), 490-493 (2000).

Homo sapiens neanderthalensis mitochondrial D-loop, hypervariable region I.

>gi|13272864|gb|AF346985.1|AF346985 Homo sapiens mitochondrion, 

complete genome. Length = 16567

 Score = 486 bits (245), Expect = e-135

 Identities = 318/345 (92%), Gaps = 1/345 (0%)

 Strand = Plus / Plus

Query: 1 ccaagtattgactcacccatcaacaaccgccatgtatttcgtacattactgccagccacc 60

 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||

Sbjct: 16054 ccaagtattgactcacccatcaacaaccgctatgtatttcgtacattactgccagccacc 16113

Query: 61 atgaatattgtacagtaccataattacttgactacctgtaatacataaaaacctaatcca 120

 ||||||||||||||||||||||| |||||||||||||||| ||||||||||| || |||

Sbjct: 16114 atgaatattgtacagtaccataaatacttgactacctgtagtacataaaaactcaaccca 16173

Query: 121 catcaaccccccccccccatgcttacaagcaagcacagcaatcaaccttcaactgtcata 180

 |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |

Sbjct: 16174 catcaaaaccctgcccccatgcttacaagcaagtacagcaatcaaccttcaactgtcaca 16233

Query: 181 catcaactacaactccaaagacacccttacacccactaggatatcaacaaacctacccac 240

 |||||||| ||||||||||| ||||| | |||||||||||||| ||||||||||||||||

Sbjct: 16234 catcaactgcaactccaaagccacccct-cacccactaggataccaacaaacctacccac 16292

Query: 241 ccttgacagtacatagcacataaagtcatttaccgtacatagcacattatagtcaaatcc 300

 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||

Sbjct: 16293 ccttaacagtacatagcacataaagtcatttaccgtacatagcacattacagtcaaatcc 16352

Query: 301 cttctcgcccccatggatgacccccctcagataggggtcccttga 345

 |||||||||||||||||||||||||||||||||||||||||||||

Sbjct: 16353 cttctcgcccccatggatgacccccctcagataggggtcccttga 16397

 

 

19 differences including one INSERTION altering the reading frame (comparing a fragment of 357 nucleotides)

AF282971

Krings,M., Capelli,C., Tschentscher,F., Geisert,H., Meyer,S., von Haeseler,A., Grossschmidt,K., Possnert,G., 

Paunovic,M. and Paabo,S., A view of neandertal genetic diversity, Nat. Genet. 

26 (2), 144-146 (2000).

Homo sapiens neanderthalensis mitochondrial hypervariable region I sequence.

>gi|13272864|gb|AF346985.1|AF346985 Homo sapiens mitochondrion, 

complete genome. Length = 16567

 Score = 502 bits (253), Expect = e-140

 Identities = 329/357 (92%), Gaps = 1/357 (0%)

 Strand = Plus / Plus

Query: 1 gttctttcatgggggagcagatttgggtaccacccaagtattgactcacccatcagcaac 60

 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||

Sbjct: 16021 gttctttcatggggaagcagatttgggtaccacccaagtattgactcacccatcaacaac 16080

Query: 61 cgctatgtatttcgtacattactgccagccaccatgaatattgtacagtaccataattac 120

 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||

Sbjct: 16081 cgctatgtatttcgtacattactgccagccaccatgaatattgtacagtaccataaatac 16140

Query: 121 ttgactacctgcagtacataaaaacctaatccacatcaaccccccccccccatgcttaca 180

 ||||||||||| ||||||||||||| || ||||||||| ||| ||||||||||||||

Sbjct: 16141 ttgactacctgtagtacataaaaactcaacccacatcaaaaccctgcccccatgcttaca 16200

Query: 181 agcaagcacagcaatcaaccttcaactgtcatacatcaactacaactccaaagacgccct 240

 |||||| |||||||||||||||||||||||| ||||||||| ||||||||||| | ||| 

Sbjct: 16201 agcaagtacagcaatcaaccttcaactgtcacacatcaactgcaactccaaagccacccc 16260

Query: 241 tacacccactaggatatcaacaaacctacccacccttgacagtacatagcacataaagtc 300

 | |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||

Sbjct: 16261 t-cacccactaggataccaacaaacctacccacccttaacagtacatagcacataaagtc 16319

Query: 301 atttaccgtacatagcacattacagtcaaatcccttctcgcccccatggatgacccc 357

 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||

Sbjct: 16320 atttaccgtacatagcacattacagtcaaatcccttctcgcccccatggatgacccc 16376

9 differences including a DELETION altering the reading frame (comparing a fragment of 288 nucleotides)

AF282972 

Krings,M., Capelli,C., Tschentscher,F., Geisert,H., Meyer,S., von Haeseler,A., Grossschmidt,K., Possnert,G., 

Paunovic,M. and Paabo,S., A view of neandertal genetic diversity, Nat. Genet. 26 (2), 144-146 (2000).

Homo sapiens neanderthalensis mitochondrial hypervariable region II sequence.

>gi|13272794|gb|AF346980.1|AF346980 Homo sapiens mitochondrion, 

complete genome. Length = 16570
 

 Score = 494 bits (249), Expect = e-137

 Identities = 280/289 (96%), Gaps = 1/289 (0%)

 Strand = Plus / Plus

Query: 1 ttttcgtctggggggtgtgcacgcgatagcattgcgagacgctggagccggagcacccta 60

 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||

Sbjct: 57 ttttcgtctggggggtgtgcacgcgatagcattgcgagacgctggagccggagcacccta 116

Query: 61 tgtcgcagtatctgtctttgattcctgccccattccattatttatcgcacctacgttcaa 120

 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||

Sbjct: 117 tgtcgcagtatctgtctttgattcctgcctcattctattatttatcgcacctacgttcaa 176

Query: 121 tattacaggcgagcatacttactgaagtgtgttaattaattaatgcttgtaggacataat 180

 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||

Sbjct: 177 tattacaggcgagcatacttactgaagtgtgttaattaattaatgcttgtaggacataat 236

Query: 181 aataacgactaaatgtctgcacagctgctttccacacagacatcataacaaaaaatttcc 240

 |||||| | | |||||||||||||| ||||||||||||||||||||||||||||||||||

Sbjct: 237 aataacaattgaatgtctgcacagccgctttccacacagacatcataacaaaaaatttcc 296

Query: 241 accaaacctccccct-cccccgcttctggccacagcacttaaatacatc 288

 |||||||| |||||| ||||||||||||||||||||||||||| |||||

Sbjct: 297 accaaacccccccctccccccgcttctggccacagcacttaaacacatc 345

18 Differences including one INSERTION altering the reading frame (comparing a 

fragment of 357 nucleotides)

AY149291

Schmitz,R.W., Serre,D., Bonani,G., Feine,S., Hillgruber,F., Krainitzki,H., 

Paabo,S. and Smith,F.H., The Neandertal type site revisited: 

interdisciplinary investigations of skeletal remains from the Neander 

Valley, Germany, Proc. Natl. Acad. Sci. U.S.A. 99 (20), 13342-13347 (2002).

>gi|13272864|gb|AF346985.1|AF346985 Homo sapiens mitochondrion, 

complete genome. Length = 16567

 Score = 509 bits (257), Expect = e-142

 Identities = 330/357 (92%), Gaps = 1/357 (0%)

 Strand = Plus / Plus

Query: 1 gttctttcatgggggagcagatttgggtaccacccaagtattgactcacccatcagcaac 60

 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||

Sbjct: 16021 gttctttcatggggaagcagatttgggtaccacccaagtattgactcacccatcaacaac 16080

Query: 61 cgctatgtatttcgtacattactgccagccaccatgaatattgtacagtaccataattac 120

 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||

Sbjct: 16081 cgctatgtatttcgtacattactgccagccaccatgaatattgtacagtaccataaatac 16140

Query: 121 ttgactacctgcagtacataaaaacctaatccacatcaaccccccccccccatgcttaca 180

 ||||||||||| ||||||||||||| || ||||||||| ||| ||||||||||||||

Sbjct: 16141 ttgactacctgtagtacataaaaactcaacccacatcaaaaccctgcccccatgcttaca 16200

Query: 181 agcaagcacagcaatcaaccttcaactgtcatacatcaactacaactccaaagacaccct 240

 |||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||| 

Sbjct: 16201 agcaagtacagcaatcaaccttcaactgtcacacatcaactgcaactccaaagccacccc 16260

Query: 241 tacacccactaggatatcaacaaacctacccacccttgacagtacatagcacataaagtc 300

 | |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||

Sbjct: 16261 t-cacccactaggataccaacaaacctacccacccttaacagtacatagcacataaagtc 16319

Query: 301 atttaccgtacatagcacattacagtcaaatcccttctcgcccccatggatgacccc 357

 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||

Sbjct: 16320 atttaccgtacatagcacattacagtcaaatcccttctcgcccccatggatgacccc 16376

////////////////////

A pertinent link with one of the late Neanderthal hybrids in chain-armor found by Kazimierz Stolyhwo in Nowosiolka, Poland, and its 1908 report in Globus, Nature, etc.: http://fdocc.ucoz.com/2/stolyhwo_chain-armor_hybrid_neanderthal.pdf